Panova N., Zborníková E., Šimák O., Pohl R., Kolář M., Bogdanová K., Večeřová R., Seydlová G., Fišer R., Hadravová R., Šanderová H., Vítovská D., Šiková M., Látal T., Lovecká P., Barvík I., Krásný L., Rejman D.: Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins. PLoS ONE 2015, 10(12): e0145918. Link
Pachl P., Šimák O., Řezáčová P., Fábry M., Buděšínský M., Rosenberg I., Brynda J.: Structure-based design of a bisphosphonate 5'(3')-deoxyribonucleotidase inhibitor. MedChemComm 2015, 6, 1635-1638. Link
Petrová M., Páv O., Buděšínský M., Zborníková E., Novák P., Rosenbergová Š., Pačes O., Liboska R., Dvořáková I., Šimák O., Rosenberg I.: Straightforward Synthesis of Purine 4′-Alkoxy-2′-deoxynucleosides: First Report of Mixed Purine−Pyrimidine 4′-Alkoxyoligodeoxynucleotides as New RNA Mimics. Org. Lett. 2015, 17, 3426-3429. Link
Šimák O., Pachl P., Fábry M., Buděšínský M., Jandušík T., Hnízda A., Skleničková R., Petrová M., Veverka V., Řezáčová P., Brynda J., Rosenberg I.: Conformationally constrained nucleoside phosphonic acids – potent inhibitors of human mitochondrial and cytosolic 5′(3′)-nucleotidases Org. Biomol. Chem. 2014, 12, 7971-7982. Link
Šípová H., Špringer T., Rejman D., Šimák O., Petrová M., Novák P., Rosenbergová Š., Páv O., Liboska R., Barvík I., Štěpánek J., Rosenberg I., Homola, J.: 5’-O-Methylphosphonate nucleic acids – new modified DNAs that increase the E. coli RNase H cleavage rate of hybrid duplexes. Nucleic Acids Research, 2014, 42, 5378-89. Link
Šimák O., Košiová I., Panova N., Buděšínský M., Petrová M., Rejman D., Liboska R., Páv O., Rosenberg I.: Inhibition of Human Thymidine Phosphorylase by Conformationally Constrained Pyrimidine Nucleoside Phosphonic Acids and their “Open-Structure” Isosteres. European Journal of Medicinal Chemistry 2014, 74, 145-168. Link
Pachl P., Fábry M., Rosenberg I., Šimák O., Řezáčová P., Brynda J.: Structures of human cytosolic and mitochondrial nucleotidases: implications for structure-based design of selective inhibitors. Acta Crystallographica Section D, 2014, 70, 461-470. Link
Zelenka K.; Trnka T., Tislerova I., Monti D., Cinti S., Naitana M.L., Schiaffino L., Vananzi M., Laguzzi G., Luvidi L., Mancini G., Nováková Z., Šimák O., Wimmer Z., Drašar P.: Spectroscopic, Morphological, and Mechanistic Investigation of the Solvent-Promoted Aggregation of Porphyrins Modified in meso-Positions by Glucosylated Steroids. Chem.-Eur. J. 2011, 17, 13743-13753. Link
Štěpánek P., Šimák O., Nováková Z., Wimmer Z., Drašar P.: Asymmetrically substituted calix[4]pyrrole with chiral substituents. Org. Biomol. Chem. 2011, 9, 682-683. Link
Pressová M., Buděšínský M., Košiová I., Kopecký V., Cvačka J., Kašička V., Šimák O., Točík Z., Rosenberg I.: Oligomerization of Adenosin-5 '-O-ylmethylphosphonate, an Isopolar AMP Analogue: Evaluation of the Route to Short Oligoadenylates. Biopolymers 2010, 93, 277-289. Link
Košiová I., Točík Z., Buděšínský M., Šimák O., Liboska R., Rejman D., Pačes O., Rosenberg I.: Methyl 4-toluenesulfonyloxymethylphosphonate, a new and versatile reagent for the convenient synthesis of phosphonate-containing compounds. Tetrahedron Lett. 2009, 50, 6745-6747. Link
Šimák O., Staněk J., Moravcová J.: A stereocontrolled synthesis of 3-acetamido-1,3,5-trideoxy- and 1,3,5,6-tetradeoxy-1,5-imino-D-glucitol. Carbohydr. Res. 2009, 344, 966-971. Link